Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG11203.1 | CDG11970.1 | SMDB11_0620 | SMDB11_1395 | Putative oxidoreductase. | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | 0.536 |
CDG11203.1 | CDG12462.1 | SMDB11_0620 | SMDB11_1886 | Putative oxidoreductase. | Hypothetical protein. | 0.728 |
CDG11203.1 | CDG13005.1 | SMDB11_0620 | SMDB11_2438 | Putative oxidoreductase. | Putative 4-carboxymuconolactone decarboxylase. | 0.728 |
CDG11203.1 | cysC | SMDB11_0620 | SMDB11_0130 | Putative oxidoreductase. | Adenosine 5'-phosphosulfate kinase; Catalyzes the synthesis of activated sulfate. | 0.776 |
CDG11203.1 | cysD | SMDB11_0620 | SMDB11_0128 | Putative oxidoreductase. | Sulfate adenylyltransferase, subunit 2. | 0.774 |
CDG11203.1 | cysI | SMDB11_0620 | SMDB11_0124 | Putative oxidoreductase. | Sulfite reductase, beta subunit,NAD(P)-binding,heme-binding; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.995 |
CDG11203.1 | cysJ | SMDB11_0620 | SMDB11_0123 | Putative oxidoreductase. | Sulfite reductase, alpha subunit, flavoprotein; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the N-terminal section; belongs to the flavodoxin family. | 0.922 |
CDG11203.1 | cysN | SMDB11_0620 | SMDB11_0129 | Putative oxidoreductase. | Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.774 |
CDG11203.1 | cysP | SMDB11_0620 | SMDB11_2853 | Putative oxidoreductase. | Thiosulfate transporter subunit. | 0.732 |
CDG11970.1 | CDG11203.1 | SMDB11_1395 | SMDB11_0620 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Putative oxidoreductase. | 0.536 |
CDG11970.1 | CDG12462.1 | SMDB11_1395 | SMDB11_1886 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Hypothetical protein. | 0.531 |
CDG11970.1 | CDG13005.1 | SMDB11_1395 | SMDB11_2438 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Putative 4-carboxymuconolactone decarboxylase. | 0.531 |
CDG11970.1 | cysC | SMDB11_1395 | SMDB11_0130 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Adenosine 5'-phosphosulfate kinase; Catalyzes the synthesis of activated sulfate. | 0.545 |
CDG11970.1 | cysD | SMDB11_1395 | SMDB11_0128 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Sulfate adenylyltransferase, subunit 2. | 0.543 |
CDG11970.1 | cysI | SMDB11_1395 | SMDB11_0124 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Sulfite reductase, beta subunit,NAD(P)-binding,heme-binding; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.493 |
CDG11970.1 | cysJ | SMDB11_1395 | SMDB11_0123 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Sulfite reductase, alpha subunit, flavoprotein; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the N-terminal section; belongs to the flavodoxin family. | 0.649 |
CDG11970.1 | cysN | SMDB11_1395 | SMDB11_0129 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Sulfate adenylyltransferase, subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.491 |
CDG11970.1 | cysP | SMDB11_1395 | SMDB11_2853 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Thiosulfate transporter subunit. | 0.517 |
CDG11970.1 | ydjM | SMDB11_1395 | SMDB11_1396 | Putative sodium:dicarboxylate symporter; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. | Putative membrane-bound metal-dependent hydrolase. | 0.579 |
CDG12462.1 | CDG11203.1 | SMDB11_1886 | SMDB11_0620 | Hypothetical protein. | Putative oxidoreductase. | 0.728 |
page 1 of 5