Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG12078.1 | CDG12257.1 | SMDB11_1505 | SMDB11_1680 | Hypothetical protein. | Putative cyclase. | 0.564 |
CDG12154.1 | CDG12161.1 | SMDB11_1580 | SMDB11_1587 | Putative isochorismatase. | Putative oxidoreductase, molybdopterin-binding and cytochrome C subunit. | 0.445 |
CDG12154.1 | CDG12257.1 | SMDB11_1580 | SMDB11_1680 | Putative isochorismatase. | Putative cyclase. | 0.415 |
CDG12161.1 | CDG12154.1 | SMDB11_1587 | SMDB11_1580 | Putative oxidoreductase, molybdopterin-binding and cytochrome C subunit. | Putative isochorismatase. | 0.445 |
CDG12161.1 | CDG12257.1 | SMDB11_1587 | SMDB11_1680 | Putative oxidoreductase, molybdopterin-binding and cytochrome C subunit. | Putative cyclase. | 0.444 |
CDG12255.1 | CDG12256.1 | SMDB11_1678 | SMDB11_1679 | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | AraC-family transcriptional regulator. | 0.635 |
CDG12255.1 | CDG12257.1 | SMDB11_1678 | SMDB11_1680 | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | Putative cyclase. | 0.492 |
CDG12255.1 | CDG12258.1 | SMDB11_1678 | SMDB11_1681 | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | Putative carboxymuconolactone decarboxylase. | 0.410 |
CDG12256.1 | CDG12255.1 | SMDB11_1679 | SMDB11_1678 | AraC-family transcriptional regulator. | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.635 |
CDG12256.1 | CDG12257.1 | SMDB11_1679 | SMDB11_1680 | AraC-family transcriptional regulator. | Putative cyclase. | 0.534 |
CDG12256.1 | CDG12258.1 | SMDB11_1679 | SMDB11_1681 | AraC-family transcriptional regulator. | Putative carboxymuconolactone decarboxylase. | 0.597 |
CDG12257.1 | CDG12078.1 | SMDB11_1680 | SMDB11_1505 | Putative cyclase. | Hypothetical protein. | 0.564 |
CDG12257.1 | CDG12154.1 | SMDB11_1680 | SMDB11_1580 | Putative cyclase. | Putative isochorismatase. | 0.415 |
CDG12257.1 | CDG12161.1 | SMDB11_1680 | SMDB11_1587 | Putative cyclase. | Putative oxidoreductase, molybdopterin-binding and cytochrome C subunit. | 0.444 |
CDG12257.1 | CDG12255.1 | SMDB11_1680 | SMDB11_1678 | Putative cyclase. | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.492 |
CDG12257.1 | CDG12256.1 | SMDB11_1680 | SMDB11_1679 | Putative cyclase. | AraC-family transcriptional regulator. | 0.534 |
CDG12257.1 | CDG12258.1 | SMDB11_1680 | SMDB11_1681 | Putative cyclase. | Putative carboxymuconolactone decarboxylase. | 0.779 |
CDG12257.1 | kynA | SMDB11_1680 | SMDB11_2283 | Putative cyclase. | Putative tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. | 0.692 |
CDG12258.1 | CDG12255.1 | SMDB11_1681 | SMDB11_1678 | Putative carboxymuconolactone decarboxylase. | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.410 |
CDG12258.1 | CDG12256.1 | SMDB11_1681 | SMDB11_1679 | Putative carboxymuconolactone decarboxylase. | AraC-family transcriptional regulator. | 0.597 |
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