STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDG12877.1Putative TonB-dependent heme receptor. (845 aa)    
Predicted Functional Partners:
CDG12875.1
Putative iron sensor protein.
 
  
 0.752
CDG12874.1
TonB-like protein.
 
 
 0.692
CDG12876.1
ECF-family RNA polymerase sigma factor.
 
  
 0.664
cjrB
TonB-like protein.
 
 
 0.628
hasB
TonB-like protein.
 
 
 0.627
hmuT
Hemin ABC transporter, substrate-binding protein.
 
  
 0.604
CDG13114.1
TonB-dependent receptor.
  
  
 0.573
CDG12864.1
Non-ribosomal peptide synthetase.
  
  
 0.539
CDG12878.1
Putative DNA polymerase V, subunit D; Belongs to the peptidase S24 family.
       0.532
hmuV
Hemin ABC transporter, ATP-binding protein; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
  
 0.523
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
Server load: low (14%) [HD]