Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG12864.1 | CDG12875.1 | SMDB11_2289 | SMDB11_2300 | Non-ribosomal peptide synthetase. | Putative iron sensor protein. | 0.461 |
CDG12864.1 | CDG12876.1 | SMDB11_2289 | SMDB11_2301 | Non-ribosomal peptide synthetase. | ECF-family RNA polymerase sigma factor. | 0.513 |
CDG12864.1 | CDG12877.1 | SMDB11_2289 | SMDB11_2302 | Non-ribosomal peptide synthetase. | Putative TonB-dependent heme receptor. | 0.539 |
CDG12864.1 | CDG13114.1 | SMDB11_2289 | SMDB11_2548 | Non-ribosomal peptide synthetase. | TonB-dependent receptor. | 0.762 |
CDG12874.1 | CDG12875.1 | SMDB11_2299 | SMDB11_2300 | TonB-like protein. | Putative iron sensor protein. | 0.586 |
CDG12874.1 | CDG12876.1 | SMDB11_2299 | SMDB11_2301 | TonB-like protein. | ECF-family RNA polymerase sigma factor. | 0.512 |
CDG12874.1 | CDG12877.1 | SMDB11_2299 | SMDB11_2302 | TonB-like protein. | Putative TonB-dependent heme receptor. | 0.692 |
CDG12874.1 | CDG13114.1 | SMDB11_2299 | SMDB11_2548 | TonB-like protein. | TonB-dependent receptor. | 0.493 |
CDG12875.1 | CDG12864.1 | SMDB11_2300 | SMDB11_2289 | Putative iron sensor protein. | Non-ribosomal peptide synthetase. | 0.461 |
CDG12875.1 | CDG12874.1 | SMDB11_2300 | SMDB11_2299 | Putative iron sensor protein. | TonB-like protein. | 0.586 |
CDG12875.1 | CDG12876.1 | SMDB11_2300 | SMDB11_2301 | Putative iron sensor protein. | ECF-family RNA polymerase sigma factor. | 0.952 |
CDG12875.1 | CDG12877.1 | SMDB11_2300 | SMDB11_2302 | Putative iron sensor protein. | Putative TonB-dependent heme receptor. | 0.752 |
CDG12876.1 | CDG12864.1 | SMDB11_2301 | SMDB11_2289 | ECF-family RNA polymerase sigma factor. | Non-ribosomal peptide synthetase. | 0.513 |
CDG12876.1 | CDG12874.1 | SMDB11_2301 | SMDB11_2299 | ECF-family RNA polymerase sigma factor. | TonB-like protein. | 0.512 |
CDG12876.1 | CDG12875.1 | SMDB11_2301 | SMDB11_2300 | ECF-family RNA polymerase sigma factor. | Putative iron sensor protein. | 0.952 |
CDG12876.1 | CDG12877.1 | SMDB11_2301 | SMDB11_2302 | ECF-family RNA polymerase sigma factor. | Putative TonB-dependent heme receptor. | 0.664 |
CDG12877.1 | CDG12864.1 | SMDB11_2302 | SMDB11_2289 | Putative TonB-dependent heme receptor. | Non-ribosomal peptide synthetase. | 0.539 |
CDG12877.1 | CDG12874.1 | SMDB11_2302 | SMDB11_2299 | Putative TonB-dependent heme receptor. | TonB-like protein. | 0.692 |
CDG12877.1 | CDG12875.1 | SMDB11_2302 | SMDB11_2300 | Putative TonB-dependent heme receptor. | Putative iron sensor protein. | 0.752 |
CDG12877.1 | CDG12876.1 | SMDB11_2302 | SMDB11_2301 | Putative TonB-dependent heme receptor. | ECF-family RNA polymerase sigma factor. | 0.664 |
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