STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdeDMultidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtB subfamily. (1039 aa)    
Predicted Functional Partners:
sdeC
Multidrug efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.996
baeR
Two-component system response regulator.
  
  
 0.847
sdeE
Multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtC subfamily.
 
   
0.799
baeS
Two-component system sensor kinase.
  
  
 0.799
mdtD
Multidrug efflux system protein.
  
 
 0.790
emrB
Multidrug efflux system protein EmrB; Belongs to the major facilitator superfamily.
  
 
 
 0.740
sdeX
Multidrug efflux pump SdeX; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.715
sdeA
Multidrug efflux pump; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.710
emrA-2
Multidrug resistance protein A.
 
   
 0.709
emrA
Putative multidrug efflux pump.
 
   
 0.673
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
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