STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDG13560.1Putative sugar transporter. (436 aa)    
Predicted Functional Partners:
CDG13559.1
Putative glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
     0.852
CDG13813.1
Major facilitator superfamily protein.
  
     0.571
hpaX
Putative 4-hydroxyphenylacetate permease.
  
     0.559
CDG11647.1
Major facilitator superfamily protein.
  
     0.552
uxuR
Uxu operon GntR-family transcriptional regulator.
 
   
 0.549
CDG13561.1
LacI-family transcriptional regulator.
 
     0.503
CDG13563.1
Hypothetical protein.
 
    0.482
CDG13057.1
Major facilitator superfamily protein.
  
     0.422
CDG13905.1
Major facilitator superfamily protein.
  
     0.413
uxaC
Uronate isomerase.
 
   
 0.412
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.