STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDG13900.1L-ribulose-5-phosphate 4-epimerase 1. (231 aa)    
Predicted Functional Partners:
CDG13899.1
Putative L-ribulose-5-phosphate 3-epimerase 1.
  
 0.995
sgbU
Putative L-ribulose-5-phosphate 3-epimerase 1.
  
 0.978
xylB
Xylulose kinase.
 
 
 0.936
sgbH
3-keto-L-gulonate-6-phosphate decarboxylase.
 
  
 0.928
rpe
Ribulose-phosphate 3-epimerase; Catalyzes the reversible epimerization of D-ribulose 5- phosphate to D-xylulose 5-phosphate; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.906
sgbE
L-ribulose-5-phosphate 4-epimerase 1.
  
  
 
0.901
CDG13897.1
L-xylulose/3-keto-L-gulonate kinase.
 
  
 0.852
uxaC
Uronate isomerase.
     
 0.820
rspB
Starvation-sensing protein (putativezinc-binding alcohol dehydrogenase).
    
 0.803
CDG13896.1
Major facilitator superfamily protein.
       0.776
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
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