Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG13896.1 | CDG13897.1 | SMDB11_3333 | SMDB11_3334 | Major facilitator superfamily protein. | L-xylulose/3-keto-L-gulonate kinase. | 0.773 |
CDG13896.1 | CDG13899.1 | SMDB11_3333 | SMDB11_3336 | Major facilitator superfamily protein. | Putative L-ribulose-5-phosphate 3-epimerase 1. | 0.801 |
CDG13896.1 | CDG13900.1 | SMDB11_3333 | SMDB11_3337 | Major facilitator superfamily protein. | L-ribulose-5-phosphate 4-epimerase 1. | 0.776 |
CDG13896.1 | sgbH | SMDB11_3333 | SMDB11_3335 | Major facilitator superfamily protein. | 3-keto-L-gulonate-6-phosphate decarboxylase. | 0.777 |
CDG13897.1 | CDG13896.1 | SMDB11_3334 | SMDB11_3333 | L-xylulose/3-keto-L-gulonate kinase. | Major facilitator superfamily protein. | 0.773 |
CDG13897.1 | CDG13899.1 | SMDB11_3334 | SMDB11_3336 | L-xylulose/3-keto-L-gulonate kinase. | Putative L-ribulose-5-phosphate 3-epimerase 1. | 0.985 |
CDG13897.1 | CDG13900.1 | SMDB11_3334 | SMDB11_3337 | L-xylulose/3-keto-L-gulonate kinase. | L-ribulose-5-phosphate 4-epimerase 1. | 0.852 |
CDG13897.1 | sgbH | SMDB11_3334 | SMDB11_3335 | L-xylulose/3-keto-L-gulonate kinase. | 3-keto-L-gulonate-6-phosphate decarboxylase. | 0.981 |
CDG13897.1 | sgbU | SMDB11_3334 | SMDB11_2529 | L-xylulose/3-keto-L-gulonate kinase. | Putative L-ribulose-5-phosphate 3-epimerase 1. | 0.935 |
CDG13899.1 | CDG13896.1 | SMDB11_3336 | SMDB11_3333 | Putative L-ribulose-5-phosphate 3-epimerase 1. | Major facilitator superfamily protein. | 0.801 |
CDG13899.1 | CDG13897.1 | SMDB11_3336 | SMDB11_3334 | Putative L-ribulose-5-phosphate 3-epimerase 1. | L-xylulose/3-keto-L-gulonate kinase. | 0.985 |
CDG13899.1 | CDG13900.1 | SMDB11_3336 | SMDB11_3337 | Putative L-ribulose-5-phosphate 3-epimerase 1. | L-ribulose-5-phosphate 4-epimerase 1. | 0.995 |
CDG13899.1 | sgbE | SMDB11_3336 | SMDB11_2528 | Putative L-ribulose-5-phosphate 3-epimerase 1. | L-ribulose-5-phosphate 4-epimerase 1. | 0.981 |
CDG13899.1 | sgbH | SMDB11_3336 | SMDB11_3335 | Putative L-ribulose-5-phosphate 3-epimerase 1. | 3-keto-L-gulonate-6-phosphate decarboxylase. | 0.996 |
CDG13899.1 | sgbU | SMDB11_3336 | SMDB11_2529 | Putative L-ribulose-5-phosphate 3-epimerase 1. | Putative L-ribulose-5-phosphate 3-epimerase 1. | 0.902 |
CDG13900.1 | CDG13896.1 | SMDB11_3337 | SMDB11_3333 | L-ribulose-5-phosphate 4-epimerase 1. | Major facilitator superfamily protein. | 0.776 |
CDG13900.1 | CDG13897.1 | SMDB11_3337 | SMDB11_3334 | L-ribulose-5-phosphate 4-epimerase 1. | L-xylulose/3-keto-L-gulonate kinase. | 0.852 |
CDG13900.1 | CDG13899.1 | SMDB11_3337 | SMDB11_3336 | L-ribulose-5-phosphate 4-epimerase 1. | Putative L-ribulose-5-phosphate 3-epimerase 1. | 0.995 |
CDG13900.1 | rpe | SMDB11_3337 | SMDB11_3847 | L-ribulose-5-phosphate 4-epimerase 1. | Ribulose-phosphate 3-epimerase; Catalyzes the reversible epimerization of D-ribulose 5- phosphate to D-xylulose 5-phosphate; Belongs to the ribulose-phosphate 3-epimerase family. | 0.906 |
CDG13900.1 | rspB | SMDB11_3337 | SMDB11_2957 | L-ribulose-5-phosphate 4-epimerase 1. | Starvation-sensing protein (putativezinc-binding alcohol dehydrogenase). | 0.803 |
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