STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDG13930.1Putative alpha/beta hydrolase. (272 aa)    
Predicted Functional Partners:
CDG13931.1
Putative dioxygenase.
 
     0.906
CDG13929.1
Putative short chain dehydrogenase.
 
   0.876
nadX
Putative dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
 
     0.844
CDG13934.1
Dioxygenase superfamily protein.
 
  
 0.795
CDG13937.1
Putative [2Fe-2S] protein.
 
 
 
 0.733
CDG13927.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.699
CDG13933.1
Putative pyridine nucleotide-disulphide oxidoreductase.
 
 
   0.658
CDG13926.1
Putative thiamine pyrophosphate enzyme; Belongs to the TPP enzyme family.
 
   
 0.657
CDG13932.1
Major facilitator superfamily protein.
 
     0.598
CDG12864.1
Non-ribosomal peptide synthetase.
  
 
 0.581
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
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