Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG11017.1 | abgB | SMDB11_0429 | SMDB11_3472 | Putative peptidase. | Aminobenzoyl-glutamate utilization protein B. | 0.415 |
CDG11017.1 | abgT | SMDB11_0429 | SMDB11_3473 | Putative peptidase. | Predicted crypticaminobenzoyl-glutamate transporter. | 0.510 |
CDG11926.1 | abgB | SMDB11_1351 | SMDB11_3472 | Penicillin-binding protein. | Aminobenzoyl-glutamate utilization protein B. | 0.471 |
CDG12470.1 | abgB | SMDB11_1894 | SMDB11_3472 | Putative peptidase/amidohydrolase. | Aminobenzoyl-glutamate utilization protein B. | 0.408 |
CDG12470.1 | abgT | SMDB11_1894 | SMDB11_3473 | Putative peptidase/amidohydrolase. | Predicted crypticaminobenzoyl-glutamate transporter. | 0.503 |
abgA | abgB | SMDB11_3471 | SMDB11_3472 | Aminobenzoyl-glutamate utilization protein A. | Aminobenzoyl-glutamate utilization protein B. | 0.873 |
abgA | abgR | SMDB11_3471 | SMDB11_3470 | Aminobenzoyl-glutamate utilization protein A. | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.550 |
abgA | abgT | SMDB11_3471 | SMDB11_3473 | Aminobenzoyl-glutamate utilization protein A. | Predicted crypticaminobenzoyl-glutamate transporter. | 0.874 |
abgB | CDG11017.1 | SMDB11_3472 | SMDB11_0429 | Aminobenzoyl-glutamate utilization protein B. | Putative peptidase. | 0.415 |
abgB | CDG11926.1 | SMDB11_3472 | SMDB11_1351 | Aminobenzoyl-glutamate utilization protein B. | Penicillin-binding protein. | 0.471 |
abgB | CDG12470.1 | SMDB11_3472 | SMDB11_1894 | Aminobenzoyl-glutamate utilization protein B. | Putative peptidase/amidohydrolase. | 0.408 |
abgB | abgA | SMDB11_3472 | SMDB11_3471 | Aminobenzoyl-glutamate utilization protein B. | Aminobenzoyl-glutamate utilization protein A. | 0.873 |
abgB | abgR | SMDB11_3472 | SMDB11_3470 | Aminobenzoyl-glutamate utilization protein B. | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | 0.552 |
abgB | abgT | SMDB11_3472 | SMDB11_3473 | Aminobenzoyl-glutamate utilization protein B. | Predicted crypticaminobenzoyl-glutamate transporter. | 0.814 |
abgR | abgA | SMDB11_3470 | SMDB11_3471 | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | Aminobenzoyl-glutamate utilization protein A. | 0.550 |
abgR | abgB | SMDB11_3470 | SMDB11_3472 | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | Aminobenzoyl-glutamate utilization protein B. | 0.552 |
abgR | abgT | SMDB11_3470 | SMDB11_3473 | LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. | Predicted crypticaminobenzoyl-glutamate transporter. | 0.493 |
abgT | CDG11017.1 | SMDB11_3473 | SMDB11_0429 | Predicted crypticaminobenzoyl-glutamate transporter. | Putative peptidase. | 0.510 |
abgT | CDG12470.1 | SMDB11_3473 | SMDB11_1894 | Predicted crypticaminobenzoyl-glutamate transporter. | Putative peptidase/amidohydrolase. | 0.503 |
abgT | abgA | SMDB11_3473 | SMDB11_3471 | Predicted crypticaminobenzoyl-glutamate transporter. | Aminobenzoyl-glutamate utilization protein A. | 0.874 |
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