Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CDG12152.1 | CDG14228.1 | SMDB11_1578 | SMDB11_3664 | Aldehyde dehydrogenase. | Putative zinc-binding alcohol dehydrogenase. | 0.813 |
CDG12152.1 | CDG15241.1 | SMDB11_1578 | SMDB11_4683 | Aldehyde dehydrogenase. | Putative omega-amino acid-pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.901 |
CDG12152.1 | acs | SMDB11_1578 | SMDB11_4400 | Aldehyde dehydrogenase. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. Acs undergoes a two-step reaction. In the first half reaction, Acs combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.927 |
CDG12152.1 | fadB | SMDB11_1578 | SMDB11_4358 | Aldehyde dehydrogenase. | Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.914 |
CDG12152.1 | fadJ | SMDB11_1578 | SMDB11_2771 | Aldehyde dehydrogenase. | Fatty acid oxidation complex alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.914 |
CDG12152.1 | mmsA_2 | SMDB11_1578 | SMDB11_3907 | Aldehyde dehydrogenase. | Aldehyde dehydrogenase. | 0.922 |
CDG12152.1 | pflB | SMDB11_1578 | SMDB11_0985 | Aldehyde dehydrogenase. | Pyruvate formate lyase I. | 0.810 |
CDG12152.1 | prpC | SMDB11_1578 | SMDB11_0735 | Aldehyde dehydrogenase. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.847 |
CDG12152.1 | pta | SMDB11_1578 | SMDB11_2709 | Aldehyde dehydrogenase. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.835 |
CDG12152.1 | puuE | SMDB11_1578 | SMDB11_3545 | Aldehyde dehydrogenase. | 4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.918 |
CDG14228.1 | CDG12152.1 | SMDB11_3664 | SMDB11_1578 | Putative zinc-binding alcohol dehydrogenase. | Aldehyde dehydrogenase. | 0.813 |
CDG14228.1 | CDG15241.1 | SMDB11_3664 | SMDB11_4683 | Putative zinc-binding alcohol dehydrogenase. | Putative omega-amino acid-pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.800 |
CDG14228.1 | acs | SMDB11_3664 | SMDB11_4400 | Putative zinc-binding alcohol dehydrogenase. | acetyl-CoA synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. Acs undergoes a two-step reaction. In the first half reaction, Acs combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA. | 0.910 |
CDG14228.1 | fadB | SMDB11_3664 | SMDB11_4358 | Putative zinc-binding alcohol dehydrogenase. | Enoyl-CoA hydratase/Delta(3)-cis-Delta(2)-trans-enoyl-CoA isomerase/3-hydroxybutyryl-CoA epimerase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.923 |
CDG14228.1 | fadJ | SMDB11_3664 | SMDB11_2771 | Putative zinc-binding alcohol dehydrogenase. | Fatty acid oxidation complex alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.923 |
CDG14228.1 | mmsA_2 | SMDB11_3664 | SMDB11_3907 | Putative zinc-binding alcohol dehydrogenase. | Aldehyde dehydrogenase. | 0.906 |
CDG14228.1 | pflB | SMDB11_3664 | SMDB11_0985 | Putative zinc-binding alcohol dehydrogenase. | Pyruvate formate lyase I. | 0.901 |
CDG14228.1 | prpC | SMDB11_3664 | SMDB11_0735 | Putative zinc-binding alcohol dehydrogenase. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.909 |
CDG14228.1 | pta | SMDB11_3664 | SMDB11_2709 | Putative zinc-binding alcohol dehydrogenase. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.917 |
CDG15241.1 | CDG12152.1 | SMDB11_4683 | SMDB11_1578 | Putative omega-amino acid-pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Aldehyde dehydrogenase. | 0.901 |
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