STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srfAPutative SsrAB-activated gene. (412 aa)    
Predicted Functional Partners:
srfB
Putative SsrAB-activated gene.
 
  
 0.990
srfC
Putative SsrAB-activated gene.
 
  
 0.964
CDG15057.1
Putative exported protein.
  
     0.650
CDG11326.1
Putative exported protein.
  
     0.621
mtlR
DNA-binding repressor.
  
     0.606
CDG14809.1
Hypothetical protein.
  
     0.571
CDG11249.1
Hypothetical protein.
  
     0.536
CDG13751.1
Putative alpha-2-macroglobulin-like protease inhibitor.
 
  
 0.532
wecH
Putative membrane-associated acyltransferase; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.505
CDG10863.1
Putative exported protein.
  
     0.471
Your Current Organism:
Serratia marcescens
NCBI taxonomy Id: 273526
Other names: S. marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens Db11, Serratia marcescens subsp. marcescens str. Db11, Serratia marcescens subsp. marcescens strain Db11
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.