STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OpuCBABC-type transporter, integral membrane subunit. (240 aa)    
Predicted Functional Partners:
OpuCA
Osmoprotectant transport system ATP-binding protein.
 
 0.997
YehZ
ABC-type glycine betaine transport, periplasmic subunit precursor.
 
 0.996
OpuBB
ABC-type transporter, integral membrane subunit.
 
 
0.995
GbuA
Glycine/betaine ABC transporter ATP-binding protein.
 
  
 0.684
BW34_00568
Metal-dependent hydrolase.
  
    0.650
EpsH_1
Glycosyltransferase.
       0.639
BW34_00569
Putative integral membrane protein.
       0.639
BW34_00570
Hypothetical protein.
       0.639
LpdA_1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
     
 0.605
GbuC
Glycine/betaine ABC transporter substrate-binding protein.
 
  
 0.493
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
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