Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BW34_00581 | BW34_00582 | BW34_00581 | BW34_00582 | Putative dehydrogenase. | Putative acetyltransferase. | 0.810 |
BW34_00581 | Idi_1 | BW34_00581 | BW34_00580 | Putative dehydrogenase. | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | 0.628 |
BW34_00582 | BW34_00581 | BW34_00582 | BW34_00581 | Putative acetyltransferase. | Putative dehydrogenase. | 0.810 |
BW34_00582 | Idi_1 | BW34_00582 | BW34_00580 | Putative acetyltransferase. | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | 0.563 |
BW34_01535 | Idi_1 | BW34_01535 | BW34_00580 | Superfamily II DNA and RNA helicase. | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | 0.492 |
BW34_01535 | rph | BW34_01535 | BW34_00605 | Superfamily II DNA and RNA helicase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.524 |
CshA | Idi_1 | BW34_02248 | BW34_00580 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | 0.492 |
CshA | rph | BW34_02248 | BW34_00605 | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.524 |
Idi_1 | BW34_00581 | BW34_00580 | BW34_00581 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | Putative dehydrogenase. | 0.628 |
Idi_1 | BW34_00582 | BW34_00580 | BW34_00582 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | Putative acetyltransferase. | 0.563 |
Idi_1 | BW34_01535 | BW34_00580 | BW34_01535 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | Superfamily II DNA and RNA helicase. | 0.492 |
Idi_1 | CshA | BW34_00580 | BW34_02248 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | DEAD/DEAH box helicase domain protein; Belongs to the DEAD box helicase family. | 0.492 |
Idi_1 | RhlE_2 | BW34_00580 | BW34_01470 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | ATP-dependent RNA helicase. | 0.492 |
Idi_1 | Rnr | BW34_00580 | BW34_01901 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | RNB-like protein. | 0.645 |
Idi_1 | dapF | BW34_00580 | BW34_02801 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.418 |
Idi_1 | deaD | BW34_00580 | BW34_01012 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.492 |
Idi_1 | rph | BW34_00580 | BW34_00605 | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.520 |
RhlE_2 | Idi_1 | BW34_01470 | BW34_00580 | ATP-dependent RNA helicase. | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | 0.492 |
RhlE_2 | rph | BW34_01470 | BW34_00605 | ATP-dependent RNA helicase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.524 |
Rnr | Idi_1 | BW34_01901 | BW34_00580 | RNB-like protein. | NTP pyrophosphohydrolase including oxidative damage repair enzyme. | 0.645 |
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