STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW34_00750HhH-GPD family protein. (191 aa)    
Predicted Functional Partners:
xth
Exodeoxyribonuclease III.
  
 0.733
ExoA
Exonuclease III.
  
 0.733
polA
DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 
 0.600
HemY_2
Protoporphyrinogen oxidase.
       0.560
BW34_00103
5'-3' exonuclease.
 
 
 0.524
LigD_2
ATP-dependent DNA ligase.
 
   
 0.523
BW34_01076
HNH endonuclease.
  
     0.482
Fpg2
Formamidopyrimidine-DNA glycosylase; Belongs to the FPG family.
  
  
 0.482
LigC_2
ATP-dependent DNA ligase.
 
   
 0.482
BW34_01978
HNH endonuclease.
  
     0.479
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.