STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AbnAGlycosyl hydrolase, family 43. (325 aa)    
Predicted Functional Partners:
MdxE_2
ABC transporter, sugar binding protein.
 
    0.875
UgpA
Putative ABC transporter permease protein.
 
     0.811
LacZ_1
Glycoside hydrolase family 2 sugar binding protein; Belongs to the glycosyl hydrolase 2 family.
 
     0.807
AraQ_5
ABC transporter, permease protein.
  
    0.776
CcpA_5
LacI family transcription regulator.
       0.517
Abf2
Alpha-L-arabinofuranosidase.
 
  
 0.509
ramA
Putative alpha-rhamnosidase.
 
     0.435
BW34_00416
Hypothetical protein.
 
   
 0.409
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.