STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RamADNA-binding protein. (282 aa)    
Predicted Functional Partners:
BW34_02676
PAS domain and PAC motif-containing protein.
  
 
 0.700
lsr2
LSR2-family protein.
       0.687
hipB
Transcriptional regulator.
   
 
 0.659
NreB
Signal transduction histidine kinase.
 
 
 0.604
YjcH
Putative membrane protein.
  
    0.556
actP
SSS family solute/sodium (Na+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.556
BW34_01284
TPR repeat-containing protein.
  
 
   0.508
BW34_00865
UspA domain-containing protein.
  
    0.470
DesK_3
Putative signal transduction histidine kinase.
 
 
 0.465
BW34_01819
Dipeptidyl aminopeptidase/acylaminoacyl-peptidase.
  
     0.439
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.