Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
XylG_1Sugar ABC transporter ATP-binding protein. (509 aa)    
Predicted Functional Partners:
XylH_1
Sugar ABC transporter permease protein.
 
  
 0.941
ChvE
Sugar ABC transporter substrate-binding protein.
  
 0.911
YjfF
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
 0.872
RbsC_1
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
 0.866
YtfT
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
 
 0.843
YtfQ_1
Sugar ABC transporter substrate-binding protein.
 
 
 0.783
XylH_2
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.762
XylH_3
Branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.756
BW34_02092
Hypothetical protein.
       0.723
XylF_1
Putative D-xylose ABC transporter, D-xylose-binding protein.
 
  
 0.691
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
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