STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW34_02428Ribonuclease BN. (379 aa)    
Predicted Functional Partners:
ExoA
Exonuclease III.
  
    0.803
sdhB
Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
       0.706
SdhA
Succinate dehydrogenase, flavoprotein subunit.
       0.704
BW34_02373
Glycosyl transferase family 2 precursor.
  
     0.698
BW34_01288
Carbamoylphosphate synthase, large chain.
  
     0.696
BW34_00494
Putative oxidoreductase.
  
     0.694
BW34_02537
Putative protocatechuate 3,4-dioxygenase beta subunit.
  
     0.669
trpS
Tryptophan--tRNA ligase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.665
BW34_02431
Cytochrome bd-type quinol oxidase, subunit.
       0.620
BW34_01921
Phenylpropionate dioxygenase-hydroxylating dioxygenase, large terminal subunit.
  
     0.579
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
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