STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BW34_02458Small integral membrane protein. (62 aa)    
Predicted Functional Partners:
BW34_02456
Mismatch repair ATPase.
 
     0.956
BW34_02455
Arginine/lysine/ornithine decarboxylase.
 
     0.953
BW34_02459
Alkaline shock protein 23 domain protein.
 
     0.901
BW34_02461
Aspartate/tyrosine/aromatic aminotransferase.
 
     0.882
BW34_02457
NTP pyrophosphohydrolase including oxidative damage repair enzyme.
       0.812
BW34_02454
CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
     0.670
RpoE
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.656
BW34_01757
Stress-like protein.
 
     0.554
BW34_00613
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
  
     0.533
BW34_02460
Hypothetical protein.
       0.484
Your Current Organism:
Microbacterium oleivorans
NCBI taxonomy Id: 273677
Other names: DSM 16091, JCM 14341, M. oleivorans, Microbacterium oleivorans Schippers et al. 2005, NBRC 103075, NCIMB 14003, strain BAS69
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.