Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL48548.1 | KJL49357.1 | RS84_01309 | RS84_00064 | Putative DEAD-box ATP-dependent RNA helicase. | Hypothetical protein. | 0.588 |
KJL48548.1 | rnr | RS84_01309 | RS84_03356 | Putative DEAD-box ATP-dependent RNA helicase. | Ribonuclease R. | 0.495 |
KJL49357.1 | KJL48548.1 | RS84_00064 | RS84_01309 | Hypothetical protein. | Putative DEAD-box ATP-dependent RNA helicase. | 0.588 |
KJL49357.1 | KJL49359.1 | RS84_00064 | RS84_00066 | Hypothetical protein. | Putative rhodanese-related sulfurtransferase; Belongs to the UPF0176 family. | 0.551 |
KJL49357.1 | cshA | RS84_00064 | RS84_03547 | Hypothetical protein. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.588 |
KJL49357.1 | dapF | RS84_00064 | RS84_03271 | Hypothetical protein. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.579 |
KJL49357.1 | deaD_2 | RS84_00064 | RS84_03106 | Hypothetical protein. | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.588 |
KJL49357.1 | rhlE | RS84_00064 | RS84_03568 | Hypothetical protein. | ATP-dependent RNA helicase RhlE. | 0.588 |
KJL49357.1 | ribBA_2 | RS84_00064 | RS84_03689 | Hypothetical protein. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family. | 0.752 |
KJL49357.1 | rnr | RS84_00064 | RS84_03356 | Hypothetical protein. | Ribonuclease R. | 0.572 |
KJL49357.1 | srlR_1 | RS84_00064 | RS84_00065 | Hypothetical protein. | Glucitol operon repressor. | 0.733 |
KJL49357.1 | thiD | RS84_00064 | RS84_00447 | Hypothetical protein. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.508 |
KJL49359.1 | KJL49357.1 | RS84_00066 | RS84_00064 | Putative rhodanese-related sulfurtransferase; Belongs to the UPF0176 family. | Hypothetical protein. | 0.551 |
KJL49359.1 | srlR_1 | RS84_00066 | RS84_00065 | Putative rhodanese-related sulfurtransferase; Belongs to the UPF0176 family. | Glucitol operon repressor. | 0.762 |
cshA | KJL49357.1 | RS84_03547 | RS84_00064 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.588 |
cshA | rnr | RS84_03547 | RS84_03356 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Ribonuclease R. | 0.495 |
dapF | KJL49357.1 | RS84_03271 | RS84_00064 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Hypothetical protein. | 0.579 |
dapF | ribBA_2 | RS84_03271 | RS84_03689 | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family. | 0.502 |
deaD_2 | KJL49357.1 | RS84_03106 | RS84_00064 | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Hypothetical protein. | 0.588 |
deaD_2 | rnr | RS84_03106 | RS84_03356 | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | Ribonuclease R. | 0.495 |
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