STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desK_1Sensor histidine kinase DesK. (417 aa)    
Predicted Functional Partners:
liaR_1
Transcriptional regulatory protein LiaR.
  0.969
vraR_1
Response regulator protein VraR.
  
  0.861
degU_2
Transcriptional regulatory protein DegU.
 
  0.861
vraR_6
Response regulator protein VraR.
 
  0.861
liaR_4
Transcriptional regulatory protein LiaR.
 
  0.860
vraR_5
Response regulator protein VraR.
 
  0.860
liaR_2
Transcriptional regulatory protein LiaR.
 
  0.850
liaR_5
Transcriptional regulatory protein LiaR.
 
  0.850
degU_1
Transcriptional regulatory protein DegU.
 
  0.844
degU_4
Transcriptional regulatory protein DegU.
 
  0.838
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.