STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bdbDDisulfide bond formation protein D precursor. (213 aa)    
Predicted Functional Partners:
KJL48946.1
Hypothetical protein.
       0.605
KJL48948.1
Hypothetical protein; Activator of Hsp90 ATPase homolog 1-like protein.
       0.596
KJL48949.1
Hypothetical protein; Activator of Hsp90 ATPase homolog 1-like protein.
       0.596
KJL46076.1
Vitamin K epoxide reductase family protein.
 
  
 0.577
KJL48043.1
Hypothetical protein.
  
 
 0.567
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily.
       0.438
KJL48945.1
Hypothetical protein.
       0.438
KJL48943.1
Polyphosphate kinase 2 (PPK2).
       0.421
ykuV
Thiol-disulfide oxidoreductase YkuV.
 
 
 0.402
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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