STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL49067.1CsbD-like protein; Belongs to the UPF0337 (CsbD) family. (68 aa)    
Predicted Functional Partners:
ybdK_1
Carboxylate-amine ligase YbdK; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
  
    0.565
KJL48565.1
Hypothetical protein.
   
    0.554
KJL47435.1
Hypothetical protein.
   
    0.554
KJL49068.1
Hypothetical protein; Rho termination factor, N-terminal domain.
       0.548
KJL49066.1
NAD dependent epimerase/dehydratase family protein.
  
    0.510
KJL49429.1
Hypothetical protein.
   
    0.472
yhfK
Putative sugar epimerase YhfK.
   
    0.472
qacA_1
Antiseptic resistance protein.
       0.449
KJL49071.1
Hypothetical protein.
       0.449
KJL49065.1
Hypothetical protein.
       0.429
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.