Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL49085.1 | KJL49087.1 | RS84_00715 | RS84_00717 | RmlD substrate binding domain protein. | Hypothetical protein. | 0.543 |
KJL49085.1 | acrR | RS84_00715 | RS84_00716 | RmlD substrate binding domain protein. | HTH-type transcriptional regulator AcrR. | 0.773 |
KJL49087.1 | KJL49085.1 | RS84_00717 | RS84_00715 | Hypothetical protein. | RmlD substrate binding domain protein. | 0.543 |
KJL49087.1 | acrR | RS84_00717 | RS84_00716 | Hypothetical protein. | HTH-type transcriptional regulator AcrR. | 0.751 |
acrR | KJL49085.1 | RS84_00716 | RS84_00715 | HTH-type transcriptional regulator AcrR. | RmlD substrate binding domain protein. | 0.773 |
acrR | KJL49087.1 | RS84_00716 | RS84_00717 | HTH-type transcriptional regulator AcrR. | Hypothetical protein. | 0.751 |
acrR | sigJ_1 | RS84_00716 | RS84_01169 | HTH-type transcriptional regulator AcrR. | ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. | 0.423 |
sigJ_1 | acrR | RS84_01169 | RS84_00716 | ECF RNA polymerase sigma factor SigJ; Belongs to the sigma-70 factor family. | HTH-type transcriptional regulator AcrR. | 0.423 |