STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL48646.1Hypothetical protein. (781 aa)    
Predicted Functional Partners:
KJL49129.1
Alpha-L-fucosidase.
 
 
  0.917
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  0.853
rhgT
Rhamnogalacturonan acetylesterase RhgT.
  
 
  0.813
pelA_2
Pectate trisaccharide-lyase precursor.
  
  
 0.717
KJL47194.1
Putative endoglucanase.
  
 
  0.702
yesX_1
Rhamnogalacturonan exolyase YesX.
  
 
  0.697
KJL47973.1
Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.693
xsa
Xylosidase/arabinosidase.
  
  
  0.681
yesX_2
Rhamnogalacturonan exolyase YesX.
  
  
  0.670
KJL48693.1
Cadherin-like beta sandwich domain protein.
  
     0.658
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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