STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfAIntracellular exo-alpha-(1->5)-L-arabinofuranosidase. (507 aa)    
Predicted Functional Partners:
KJL48671.1
Maltose ABC transporter periplasmic protein.
 
    0.873
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.844
araP_2
L-arabinose transport system permease protein AraP.
 
    0.743
xynD
Arabinoxylan arabinofuranohydrolase precursor.
  
  
  0.743
uxaC
Uronate isomerase.
     
 0.741
araQ_6
L-arabinose transport system permease protein AraQ.
 
    0.729
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.596
xsa
Xylosidase/arabinosidase.
  
  
  0.588
KJL48700.1
Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.
 
     0.586
abn2
Extracellular endo-alpha-(1->5)-L-arabinanase 2 precursor.
  
  
  0.523
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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