STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bgaABeta-galactosidase BgaA. (697 aa)    
Predicted Functional Partners:
rafA_1
Alpha-galactosidase.
 
  
  0.820
rafA_2
Alpha-galactosidase.
 
  
  0.815
rafA_3
Alpha-galactosidase.
 
  
  0.795
lacF_5
Lactose transport system permease protein LacF.
       0.777
araQ_7
L-arabinose transport system permease protein AraQ.
       0.773
lacZ_2
Beta-galactosidase.
    
  0.665
lacZ_1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
    
  0.634
galM_1
Aldose 1-epimerase.
  
 
  0.624
galM_2
Aldose 1-epimerase.
  
 
  0.624
lacE_2
Lactose-binding protein precursor.
 
     0.601
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.