STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL48703.1Ricin-type beta-trefoil lectin domain protein. (1190 aa)    
Predicted Functional Partners:
iolB
5-deoxy-glucuronate isomerase.
   
    0.693
KJL48690.1
Glycosyl hydrolases family 43.
 
 
 0.607
KJL48615.1
Hypothetical protein.
    
  0.553
KJL48696.1
Hypothetical protein.
 
  
  0.472
KJL48340.1
Hypothetical protein.
  
  
  0.461
xsa
Xylosidase/arabinosidase.
 
 
0.457
lacI_4
Lactose operon repressor.
       0.447
rbsA_2
Ribose import ATP-binding protein RbsA.
       0.447
KJL48632.1
F5/8 type C domain protein.
  
     0.435
lacI_3
Lactose operon repressor.
       0.434
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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