STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araBL-arabinolactonase. (282 aa)    
Predicted Functional Partners:
KJL48351.1
Hypothetical protein.
       0.773
ilvD_1
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.661
ilvD_2
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
    
 0.661
rspA
Starvation-sensing protein RspA.
 
  
 0.639
gdhB
Quinoprotein glucose dehydrogenase B precursor.
 
  
 0.579
gntK
Thermoresistant gluconokinase.
    
 0.522
iclR_3
Acetate operon repressor.
      0.513
serA_3
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.506
mdlA_1
Mandelate racemase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.479
KJL49397.1
Nicotinamidase/pyrazinamidase.
   
 
  0.476
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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