STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betI_4HTH-type transcriptional regulator BetI. (187 aa)    
Predicted Functional Partners:
swrC
Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
    0.737
cobB
NAD-dependent protein deacetylase.
   
    0.681
yvoA
HTH-type transcriptional repressor YvoA.
   
    0.669
yybR_1
Putative HTH-type transcriptional regulator YybR.
   
    0.623
hxlR_2
HTH-type transcriptional activator HxlR.
   
    0.623
KJL48845.1
Putative HTH-type transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
    0.618
KJL48647.1
MarR family protein.
  
    0.600
ideR_2
Iron-dependent repressor IdeR.
   
    0.573
ywtF_1
Putative transcriptional regulator YwtF.
   
    0.570
ywtF_2
Putative transcriptional regulator YwtF.
   
    0.570
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.