Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL47327.1 | KJL47897.1 | RS84_02118 | RS84_01525 | Hypothetical protein. | Hypothetical protein. | 0.553 |
KJL47327.1 | KJL48384.1 | RS84_02118 | RS84_01143 | Hypothetical protein. | Hypothetical protein. | 0.716 |
KJL47327.1 | pta | RS84_02118 | RS84_00073 | Hypothetical protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.499 |
KJL47327.1 | trpE_2 | RS84_02118 | RS84_03364 | Hypothetical protein. | Anthranilate synthase component 1. | 0.524 |
KJL47601.1 | KJL47897.1 | RS84_02399 | RS84_01525 | Glyoxalase-like domain protein. | Hypothetical protein. | 0.651 |
KJL47895.1 | KJL47897.1 | RS84_01523 | RS84_01525 | Hypothetical protein. | Hypothetical protein. | 0.538 |
KJL47895.1 | badR | RS84_01523 | RS84_01524 | Hypothetical protein. | Transcriptional activatory protein BadR. | 0.538 |
KJL47897.1 | KJL47327.1 | RS84_01525 | RS84_02118 | Hypothetical protein. | Hypothetical protein. | 0.553 |
KJL47897.1 | KJL47601.1 | RS84_01525 | RS84_02399 | Hypothetical protein. | Glyoxalase-like domain protein. | 0.651 |
KJL47897.1 | KJL47895.1 | RS84_01525 | RS84_01523 | Hypothetical protein. | Hypothetical protein. | 0.538 |
KJL47897.1 | KJL48384.1 | RS84_01525 | RS84_01143 | Hypothetical protein. | Hypothetical protein. | 0.503 |
KJL47897.1 | badR | RS84_01525 | RS84_01524 | Hypothetical protein. | Transcriptional activatory protein BadR. | 0.915 |
KJL47897.1 | fusA | RS84_01525 | RS84_00545 | Hypothetical protein. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.439 |
KJL47897.1 | pta | RS84_01525 | RS84_00073 | Hypothetical protein. | Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.622 |
KJL47897.1 | ribD | RS84_01525 | RS84_03687 | Hypothetical protein. | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.502 |
KJL47897.1 | rph | RS84_01525 | RS84_00393 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.583 |
KJL47897.1 | trpE_2 | RS84_01525 | RS84_03364 | Hypothetical protein. | Anthranilate synthase component 1. | 0.590 |
KJL48384.1 | KJL47327.1 | RS84_01143 | RS84_02118 | Hypothetical protein. | Hypothetical protein. | 0.716 |
KJL48384.1 | KJL47897.1 | RS84_01143 | RS84_01525 | Hypothetical protein. | Hypothetical protein. | 0.503 |
badR | KJL47895.1 | RS84_01524 | RS84_01523 | Transcriptional activatory protein BadR. | Hypothetical protein. | 0.538 |
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