STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacF_12Lactose transport system permease protein LacF. (306 aa)    
Predicted Functional Partners:
araQ_17
L-arabinose transport system permease protein AraQ.
 
   0.964
lacE_4
Lactose-binding protein precursor.
 
  0.934
araQ_7
L-arabinose transport system permease protein AraQ.
  
   0.851
araQ_25
L-arabinose transport system permease protein AraQ.
  
   0.851
araQ_5
L-arabinose transport system permease protein AraQ.
  
   0.850
araQ_12
L-arabinose transport system permease protein AraQ.
  
   0.849
lacE_2
Lactose-binding protein precursor.
 
  0.848
lacE_5
Lactose-binding protein precursor.
 
  0.848
lacE_1
Lactose-binding protein precursor.
 
  0.826
araN_1
Putative arabinose-binding protein precursor.
 
  0.822
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.