STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdmFormaldehyde dismutase. (393 aa)    
Predicted Functional Partners:
fruA
PTS system fructose-specific EIIABC component.
  
 
 0.838
cypC
Fatty-acid peroxygenase.
 
   
 0.750
ptsG
PTS system glucose-specific EIICBA component.
   
 
 0.734
adhC
NADP-dependent alcohol dehydrogenase C.
 
0.722
yghA
Putative oxidoreductase YghA.
  
 
  0.704
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
  
 
 0.682
tdcB
L-threonine dehydratase catabolic TdcB.
   
 0.649
yjmD
Putative zinc-type alcohol dehydrogenase-like protein YjmD.
  
  
 
0.616
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
 
 
 0.564
idnD
L-idonate 5-dehydrogenase (NAD(P)(+)).
  
  
 
0.556
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.