STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF_4Oligopeptide transport ATP-binding protein OppF. (283 aa)    
Predicted Functional Partners:
gsiC_4
Glutathione transport system permease protein GsiC.
 
  0.959
oppD_3
Oligopeptide transport ATP-binding protein OppD.
 
 
0.955
dppC_2
Dipeptide transport system permease protein DppC.
 
 0.921
ddpC_2
Putative D,D-dipeptide transport system permease protein DdpC.
 
 
  0.838
gsiD_2
Glutathione transport system permease protein GsiD.
 
 
  0.829
ddpC_1
Putative D,D-dipeptide transport system permease protein DdpC.
 
 
  0.804
gsiB_3
Glutathione-binding protein GsiB precursor.
 
 
  0.801
gsiD_5
Glutathione transport system permease protein GsiD.
 
 
  0.797
oppC_1
Oligopeptide transport system permease protein OppC.
 
 
  0.791
nikB
Nickel transport system permease protein NikB.
 
 
  0.787
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.