STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yesX_2Rhamnogalacturonan exolyase YesX. (2092 aa)    
Predicted Functional Partners:
xynB_2
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.734
abn-ts
Intracellular endo-alpha-(1->5)-L-arabinanase.
  
     0.720
pelA_1
Pectate trisaccharide-lyase precursor.
  
   
 0.703
yesO_2
Putative ABC transporter substrate-binding protein YesO.
 
     0.699
pelA_2
Pectate trisaccharide-lyase precursor.
 
   
 0.682
KJL48689.1
Extracellular exo-alpha-(1->5)-L-arabinofuranosidase precursor.
  
     0.671
KJL48646.1
Hypothetical protein.
  
  
  0.670
KJL47242.1
Putative multidrug export ATP-binding/permease protein.
 
     0.670
xynZ
Endo-1,4-beta-xylanase Z precursor.
  
     0.648
KJL47131.1
Fibronectin type III domain protein.
    
  0.592
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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