STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betI_8HTH-type transcriptional regulator BetI. (190 aa)    
Predicted Functional Partners:
cocE
Cocaine esterase.
 
     0.779
mppA
Periplasmic murein peptide-binding protein precursor.
 
     0.718
KJL47251.1
Hypothetical protein; Belongs to the UPF0311 family.
 
     0.628
KJL47304.1
Hypothetical protein.
  
     0.619
KJL47248.1
Hypothetical protein.
       0.566
KJL47256.1
Hypothetical protein.
 
     0.537
oppB
Oligopeptide transport system permease protein OppB.
       0.436
gsiD_5
Glutathione transport system permease protein GsiD.
       0.436
gsiA_5
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
       0.436
nodD2_1
Nodulation protein D 2; Belongs to the LysR transcriptional regulatory family.
  
 
   0.403
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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