STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolE_2Inosose dehydratase. (274 aa)    
Predicted Functional Partners:
afr_5
1,5-anhydro-D-fructose reductase.
 
 
  0.959
afr_7
1,5-anhydro-D-fructose reductase.
 
 
  0.766
fruA
PTS system fructose-specific EIIABC component.
  
 
  0.720
trpE_2
Anthranilate synthase component 1.
 
  
  0.594
KJL47340.1
Xylose isomerase-like TIM barrel.
    
   0.577
KJL47258.1
Hypothetical protein.
       0.572
KJL47259.1
Hypothetical protein.
       0.572
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
  
 
 0.539
KJL47559.1
CAAX amino terminal protease self- immunity.
  
     0.495
KJL47168.1
Hypothetical protein.
  
     0.493
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.