STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uidABeta-glucuronidase; Belongs to the glycosyl hydrolase 2 family. (587 aa)    
Predicted Functional Partners:
KJL47300.1
Bacterial alpha-L-rhamnosidase.
 
  0.786
uxaC
Uronate isomerase.
 
 
 0.748
KJL47298.1
Ureidoglycolate lyase.
 
 
   0.713
KJL47297.1
Ureidoglycolate lyase.
   
   0.676
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.656
purN
Phosphoribosylglycinamide formyltransferase.
  
  
  0.639
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
  
  
  0.607
KJL48615.1
Hypothetical protein.
 
  
  0.596
ycdF
Glucose 1-dehydrogenase 2.
  
 
  0.592
lacC
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
   
    0.592
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.