Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KJL47300.1Bacterial alpha-L-rhamnosidase. (922 aa)    
Predicted Functional Partners:
uidA
Beta-glucuronidase; Belongs to the glycosyl hydrolase 2 family.
 
 
  0.763
bglX_3
Periplasmic beta-glucosidase precursor.
  
  
  0.693
bglA_2
Beta-glucosidase A; Belongs to the glycosyl hydrolase 1 family.
   
 
  0.615
KJL47297.1
Ureidoglycolate lyase.
       0.566
KJL47298.1
Ureidoglycolate lyase.
       0.566
pkn1
Serine/threonine-protein kinase pkn1.
   
   0.550
KJL47195.1
Bacterial alpha-L-rhamnosidase.
  
  
 
0.534
KJL47215.1
Bacterial alpha-L-rhamnosidase.
  
  
 
0.529
KJL48615.1
Hypothetical protein.
   
 
  0.528
mdtL_2
Multidrug resistance protein MdtL.
       0.523
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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