Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL46930.1 | proA_2 | RS84_03573 | RS84_02097 | Hypothetical protein. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.595 |
KJL47306.1 | KJL47311.1 | RS84_02096 | RS84_02102 | Amidohydrolase. | Hypothetical protein. | 0.696 |
KJL47306.1 | ligB | RS84_02096 | RS84_02099 | Amidohydrolase. | Protocatechuate 4,5-dioxygenase beta chain. | 0.822 |
KJL47306.1 | ligC_1 | RS84_02096 | RS84_02100 | Amidohydrolase. | 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. | 0.775 |
KJL47306.1 | nodD2_1 | RS84_02096 | RS84_02095 | Amidohydrolase. | Nodulation protein D 2; Belongs to the LysR transcriptional regulatory family. | 0.557 |
KJL47306.1 | pobA | RS84_02096 | RS84_02092 | Amidohydrolase. | P-hydroxybenzoate hydroxylase. | 0.580 |
KJL47306.1 | proA_2 | RS84_02096 | RS84_02097 | Amidohydrolase. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.990 |
KJL47311.1 | KJL47306.1 | RS84_02102 | RS84_02096 | Hypothetical protein. | Amidohydrolase. | 0.696 |
KJL47311.1 | ligB | RS84_02102 | RS84_02099 | Hypothetical protein. | Protocatechuate 4,5-dioxygenase beta chain. | 0.927 |
KJL47311.1 | ligC_1 | RS84_02102 | RS84_02100 | Hypothetical protein. | 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. | 0.887 |
KJL47311.1 | proA_2 | RS84_02102 | RS84_02097 | Hypothetical protein. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.621 |
KJL47355.1 | proA_2 | RS84_02146 | RS84_02097 | Amidohydrolase. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.736 |
KJL48548.1 | proA_2 | RS84_01309 | RS84_02097 | Putative DEAD-box ATP-dependent RNA helicase. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.483 |
deaD_2 | proA_2 | RS84_03106 | RS84_02097 | ATP-dependent RNA helicase DeaD; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.483 |
ligB | KJL47306.1 | RS84_02099 | RS84_02096 | Protocatechuate 4,5-dioxygenase beta chain. | Amidohydrolase. | 0.822 |
ligB | KJL47311.1 | RS84_02099 | RS84_02102 | Protocatechuate 4,5-dioxygenase beta chain. | Hypothetical protein. | 0.927 |
ligB | ligC_1 | RS84_02099 | RS84_02100 | Protocatechuate 4,5-dioxygenase beta chain. | 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. | 0.982 |
ligB | pobA | RS84_02099 | RS84_02092 | Protocatechuate 4,5-dioxygenase beta chain. | P-hydroxybenzoate hydroxylase. | 0.873 |
ligB | proA_2 | RS84_02099 | RS84_02097 | Protocatechuate 4,5-dioxygenase beta chain. | 4-hydroxy-4-methyl-2-oxoglutarate aldolase. | 0.789 |
ligC_1 | KJL47306.1 | RS84_02100 | RS84_02096 | 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. | Amidohydrolase. | 0.775 |
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