STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neoGParomamine 6'-oxidase. (496 aa)    
Predicted Functional Partners:
qcrC
Menaquinol-cytochrome c reductase cytochrome c subunit.
  
 
 0.857
KJL47340.1
Xylose isomerase-like TIM barrel.
 
     0.763
KJL47339.1
Xylose isomerase-like TIM barrel.
 
     0.761
KJL47345.1
Trehalose utilization.
 
     0.754
nodD2_2
Nodulation protein D 2; Belongs to the LysR transcriptional regulatory family.
 
     0.751
KJL49140.1
IPT/TIG domain protein.
   
 
 0.735
KJL47326.1
Xylose isomerase-like TIM barrel.
  
     0.734
KJL47327.1
Hypothetical protein.
  
     0.728
gntK
Thermoresistant gluconokinase.
  
  
  0.674
KJL47331.1
Bacterial extracellular solute-binding protein.
 
     0.673
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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