STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylA_2Xylose isomerase; Belongs to the xylose isomerase family. (395 aa)    
Predicted Functional Partners:
xylB_2
Xylulose kinase.
 
 
 0.996
fruA
PTS system fructose-specific EIIABC component.
     
 0.962
xyoA
Putative xylitol oxidase.
  
  
  0.895
nagK
N-acetyl-D-glucosamine kinase.
     
 0.872
sacC
Levanase precursor.
  
  
 0.853
idnD
L-idonate 5-dehydrogenase (NAD(P)(+)).
     
 0.838
lacZ_1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
     
 0.838
glcK
Glucokinase.
 
  
 0.829
lacZ_2
Beta-galactosidase.
     
 0.794
kdgK_2
2-dehydro-3-deoxygluconokinase; Belongs to the carbohydrate kinase PfkB family.
     
 0.765
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.