STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcsCSensor histidine kinase RcsC. (532 aa)    
Predicted Functional Partners:
afsQ1
Transcriptional regulatory protein AfsQ1.
  0.946
mprA_1
Response regulator MprA.
 
  0.902
mtrA
DNA-binding response regulator MtrA.
 
  0.901
tcrA
Transcriptional regulatory protein TcrA.
 
  0.899
tcrX_1
Putative transcriptional regulatory protein TcrX.
 
  0.898
regX3_1
Sensory transduction protein regX3.
 
  0.897
regX3_2
Sensory transduction protein regX3.
 
  0.894
kdpE
KDP operon transcriptional regulatory protein KdpE.
 
  0.892
tcrX_2
Putative transcriptional regulatory protein TcrX.
 
  0.889
KJL47570.1
Hypothetical protein.
    
 0.804
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.