STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msmE_10Multiple sugar-binding protein precursor. (430 aa)    
Predicted Functional Partners:
araP_5
L-arabinose transport system permease protein AraP.
 
 0.967
sugB_5
Trehalose transport system permease protein SugB.
 
  0.965
bglX_4
Periplasmic beta-glucosidase precursor.
 
     0.860
xynB_5
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
       0.768
cytR_6
HTH-type transcriptional repressor CytR.
 
     0.699
lacF_20
Lactose transport system permease protein LacF.
 
  0.668
sugC_1
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
   
  0.656
sugC_2
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
   
  0.656
lacF_18
Lactose transport system permease protein LacF.
  
  0.606
lacF_9
Lactose transport system permease protein LacF.
  
  0.588
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.