STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcpB_2Pentachlorophenol 4-monooxygenase. (373 aa)    
Predicted Functional Partners:
ubiG
Ubiquinone biosynthesis O-methyltransferase.
 
 
 0.966
KJL45961.1
Alpha-pyrone synthesis polyketide synthase-like Pks18.
 
     0.922
cypC
Fatty-acid peroxygenase.
   
 0.741
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
  
 
 0.655
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
  
  
 0.634
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
 
 
 0.617
petC1
Cytochrome b6-f complex iron-sulfur subunit 1.
  
 
 0.612
KJL45959.1
Hypothetical protein.
       0.608
KJL45960.1
CYTH domain protein.
       0.608
outO
Type 4 prepilin-like proteins leader peptide-processing enzyme; Belongs to the peptidase A24 family.
       0.603
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.