Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL45980.1 | ftsL_1 | RS84_02599 | RS84_02603 | Hypothetical protein. | Cell division protein FtsL. | 0.683 |
KJL45980.1 | mraZ | RS84_02599 | RS84_02600 | Hypothetical protein. | Protein MraZ; Belongs to the MraZ family. | 0.533 |
KJL45980.1 | pbpB | RS84_02599 | RS84_02604 | Hypothetical protein. | Penicillin-binding protein PbpB. | 0.458 |
KJL45980.1 | rsmH | RS84_02599 | RS84_02602 | Hypothetical protein. | Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.442 |
ftsL_1 | KJL45980.1 | RS84_02603 | RS84_02599 | Cell division protein FtsL. | Hypothetical protein. | 0.683 |
ftsL_1 | ftsQ | RS84_02603 | RS84_02611 | Cell division protein FtsL. | Cell division protein FtsQ; Essential cell division protein. | 0.969 |
ftsL_1 | ftsW_2 | RS84_02603 | RS84_02608 | Cell division protein FtsL. | Lipid II flippase FtsW; Belongs to the SEDS family. | 0.754 |
ftsL_1 | mraY | RS84_02603 | RS84_02606 | Cell division protein FtsL. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.662 |
ftsL_1 | mraZ | RS84_02603 | RS84_02600 | Cell division protein FtsL. | Protein MraZ; Belongs to the MraZ family. | 0.801 |
ftsL_1 | murD_1 | RS84_02603 | RS84_02607 | Cell division protein FtsL. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.662 |
ftsL_1 | murF | RS84_02603 | RS84_02605 | Cell division protein FtsL. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.679 |
ftsL_1 | murG_2 | RS84_02603 | RS84_02609 | Cell division protein FtsL. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.662 |
ftsL_1 | pbpB | RS84_02603 | RS84_02604 | Cell division protein FtsL. | Penicillin-binding protein PbpB. | 0.928 |
ftsL_1 | rsmH | RS84_02603 | RS84_02602 | Cell division protein FtsL. | Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.880 |
ftsQ | ftsL_1 | RS84_02611 | RS84_02603 | Cell division protein FtsQ; Essential cell division protein. | Cell division protein FtsL. | 0.969 |
ftsQ | ftsW_2 | RS84_02611 | RS84_02608 | Cell division protein FtsQ; Essential cell division protein. | Lipid II flippase FtsW; Belongs to the SEDS family. | 0.984 |
ftsQ | mraY | RS84_02611 | RS84_02606 | Cell division protein FtsQ; Essential cell division protein. | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.818 |
ftsQ | mraZ | RS84_02611 | RS84_02600 | Cell division protein FtsQ; Essential cell division protein. | Protein MraZ; Belongs to the MraZ family. | 0.584 |
ftsQ | murD_1 | RS84_02611 | RS84_02607 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.980 |
ftsQ | murF | RS84_02611 | RS84_02605 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.967 |
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