Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL46321.1 | focA | RS84_02952 | RS84_02951 | Hypothetical protein. | Putative formate transporter 1. | 0.483 |
fdhF | focA | RS84_03208 | RS84_02951 | Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Putative formate transporter 1. | 0.482 |
fdhF | gltB_1 | RS84_03208 | RS84_02996 | Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Glutamate synthase [NADPH] large chain. | 0.966 |
fdhF | nirD | RS84_03208 | RS84_02948 | Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Nitrite reductase (NADH) small subunit. | 0.529 |
focA | KJL46321.1 | RS84_02951 | RS84_02952 | Putative formate transporter 1. | Hypothetical protein. | 0.483 |
focA | fdhF | RS84_02951 | RS84_03208 | Putative formate transporter 1. | Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.482 |
focA | gltB_1 | RS84_02951 | RS84_02996 | Putative formate transporter 1. | Glutamate synthase [NADPH] large chain. | 0.600 |
focA | mtcA2 | RS84_02951 | RS84_03638 | Putative formate transporter 1. | Carbonic anhydrase 2. | 0.829 |
focA | nirD | RS84_02951 | RS84_02948 | Putative formate transporter 1. | Nitrite reductase (NADH) small subunit. | 0.562 |
focA | sumT | RS84_02951 | RS84_02949 | Putative formate transporter 1. | Uroporphyrinogen-III C-methyltransferase. | 0.451 |
gltB_1 | fdhF | RS84_02996 | RS84_03208 | Glutamate synthase [NADPH] large chain. | Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.966 |
gltB_1 | focA | RS84_02996 | RS84_02951 | Glutamate synthase [NADPH] large chain. | Putative formate transporter 1. | 0.600 |
gltB_1 | nirD | RS84_02996 | RS84_02948 | Glutamate synthase [NADPH] large chain. | Nitrite reductase (NADH) small subunit. | 0.708 |
gltB_1 | sumT | RS84_02996 | RS84_02949 | Glutamate synthase [NADPH] large chain. | Uroporphyrinogen-III C-methyltransferase. | 0.718 |
mtcA2 | focA | RS84_03638 | RS84_02951 | Carbonic anhydrase 2. | Putative formate transporter 1. | 0.829 |
nirD | fdhF | RS84_02948 | RS84_03208 | Nitrite reductase (NADH) small subunit. | Formate dehydrogenase H; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.529 |
nirD | focA | RS84_02948 | RS84_02951 | Nitrite reductase (NADH) small subunit. | Putative formate transporter 1. | 0.562 |
nirD | gltB_1 | RS84_02948 | RS84_02996 | Nitrite reductase (NADH) small subunit. | Glutamate synthase [NADPH] large chain. | 0.708 |
nirD | sumT | RS84_02948 | RS84_02949 | Nitrite reductase (NADH) small subunit. | Uroporphyrinogen-III C-methyltransferase. | 0.945 |
sumT | focA | RS84_02949 | RS84_02951 | Uroporphyrinogen-III C-methyltransferase. | Putative formate transporter 1. | 0.451 |
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