Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL46334.1 | KJL46335.1 | RS84_02965 | RS84_02966 | Hypothetical protein. | Hypothetical protein. | 0.491 |
KJL46335.1 | KJL46334.1 | RS84_02966 | RS84_02965 | Hypothetical protein. | Hypothetical protein. | 0.491 |
KJL46335.1 | KJL47326.1 | RS84_02966 | RS84_02117 | Hypothetical protein. | Xylose isomerase-like TIM barrel. | 0.405 |
KJL46335.1 | KJL47339.1 | RS84_02966 | RS84_02130 | Hypothetical protein. | Xylose isomerase-like TIM barrel. | 0.450 |
KJL46335.1 | KJL47340.1 | RS84_02966 | RS84_02131 | Hypothetical protein. | Xylose isomerase-like TIM barrel. | 0.461 |
KJL46335.1 | KJL47345.1 | RS84_02966 | RS84_02136 | Hypothetical protein. | Trehalose utilization. | 0.429 |
KJL46335.1 | KJL47688.1 | RS84_02966 | RS84_02487 | Hypothetical protein. | Glyoxalase-like domain protein. | 0.400 |
KJL46335.1 | efp | RS84_02966 | RS84_02967 | Hypothetical protein. | Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. | 0.457 |
KJL46335.1 | msmE_8 | RS84_02966 | RS84_02124 | Hypothetical protein. | Multiple sugar-binding protein precursor. | 0.402 |
KJL46335.1 | nusB | RS84_02966 | RS84_02968 | Hypothetical protein. | Hypothetical protein; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.457 |
KJL47326.1 | KJL46335.1 | RS84_02117 | RS84_02966 | Xylose isomerase-like TIM barrel. | Hypothetical protein. | 0.405 |
KJL47326.1 | KJL47340.1 | RS84_02117 | RS84_02131 | Xylose isomerase-like TIM barrel. | Xylose isomerase-like TIM barrel. | 0.700 |
KJL47326.1 | KJL47345.1 | RS84_02117 | RS84_02136 | Xylose isomerase-like TIM barrel. | Trehalose utilization. | 0.774 |
KJL47326.1 | msmE_8 | RS84_02117 | RS84_02124 | Xylose isomerase-like TIM barrel. | Multiple sugar-binding protein precursor. | 0.768 |
KJL47339.1 | KJL46335.1 | RS84_02130 | RS84_02966 | Xylose isomerase-like TIM barrel. | Hypothetical protein. | 0.450 |
KJL47339.1 | KJL47340.1 | RS84_02130 | RS84_02131 | Xylose isomerase-like TIM barrel. | Xylose isomerase-like TIM barrel. | 0.925 |
KJL47339.1 | KJL47345.1 | RS84_02130 | RS84_02136 | Xylose isomerase-like TIM barrel. | Trehalose utilization. | 0.867 |
KJL47339.1 | msmE_8 | RS84_02130 | RS84_02124 | Xylose isomerase-like TIM barrel. | Multiple sugar-binding protein precursor. | 0.832 |
KJL47340.1 | KJL46335.1 | RS84_02131 | RS84_02966 | Xylose isomerase-like TIM barrel. | Hypothetical protein. | 0.461 |
KJL47340.1 | KJL47326.1 | RS84_02131 | RS84_02117 | Xylose isomerase-like TIM barrel. | Xylose isomerase-like TIM barrel. | 0.700 |
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