STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL46378.1GDSL-like Lipase/Acylhydrolase. (253 aa)    
Predicted Functional Partners:
pkn1
Serine/threonine-protein kinase pkn1.
     
 0.775
naiP
Putative niacin/nicotinamide transporter NaiP.
       0.714
pelA_2
Pectate trisaccharide-lyase precursor.
    
 0.662
luxA_1
Alkanal monooxygenase alpha chain.
       0.628
yesX_1
Rhamnogalacturonan exolyase YesX.
   
 0.620
pgl_2
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
  
  0.619
KJL49146.1
Hypothetical protein.
   
  0.596
KJL48913.1
Hypothetical protein.
   
  0.596
KJL48109.1
Collagen triple helix repeat (20 copies).
   
  0.596
KJL47611.1
Hypothetical protein.
   
  0.596
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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