STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJL46532.1Carboxymuconolactone decarboxylase family protein. (112 aa)    
Predicted Functional Partners:
KJL46531.1
Cupin domain protein.
 
  
 0.928
KJL47294.1
Hypothetical protein.
     
 0.772
purB
Adenylosuccinate lyase.
  
 
 0.526
scoB
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B.
  
 
 0.487
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
  0.477
scoA
Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A.
  
 
 0.473
adhR_2
HTH-type transcriptional regulator AdhR.
 
     0.471
KJL47409.1
Tropinesterase.
  
  
  0.449
KJL47136.1
Dioxygenase.
  
 
 0.432
adhR_1
HTH-type transcriptional regulator AdhR.
 
     0.415
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.