STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqFUDP-glucose 6-dehydrogenase YwqF. (436 aa)    
Predicted Functional Partners:
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
 
 0.910
galE_2
UDP-glucose 4-epimerase.
 
 
 0.850
galE_3
UDP-glucose 4-epimerase.
  
  0.841
KJL46865.1
UDP-glucose 4-epimerase.
 
  0.817
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
    
 0.813
KJL49430.1
Putative epimerase/dehydratase.
  
  0.790
rfbM
Mannose-1-phosphate guanylyltransferase RfbM.
 
 
 0.775
galT
Galactose-1-phosphate uridylyltransferase.
    
  0.774
KJL47128.1
Polysaccharide biosynthesis protein.
  
  
 0.764
galE_1
UDP-glucose 4-epimerase.
  
  0.747
Your Current Organism:
Microbacterium hydrocarbonoxydans
NCBI taxonomy Id: 273678
Other names: DSM 16089, JCM 14340, M. hydrocarbonoxydans, Microbacterium hydrocarbonoxydans Schippers et al. 2005, NBRC 103074, NCIMB 14002, strain BNP48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.